> PLPR0189 ..AC:AB013448 ..OS:Oryza sativa ..GENE:PIB ..PROD:Pib ..[ -200:  +51] ..CDS:+82 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.28   G -  0.24   T -  0.28   C -  0.20

      1  ttatttttct catcaaacaa tagcatcttc ttctggaaat cgaattcagg
     51  gcttatatgt tgcttattct gatatatagg tctgtcacga ggcgtatgat
    101  catcaactct gccacaaaat ccattcaaaa atagaacaga GCAATggagg
    151  cgacggcgct gagtgtgggc aaatccgtgc tgaatggagc gcttggctac
    201  GCAAAATCTG CATTTGCTGA GGAGGTGGCC TTGCAGCTTG GTATCCAGAA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00132   Mean Expected Number 0.003   -strand    +29 :  +22   GCCACCTC
AC RSP00550   Mean Expected Number 0.002   -strand    -78 :  -88   TGGATTtTGTG
AC RSP00574   Mean Expected Number 0.006   -strand   -130 : -137   CAGAATAA
AC RSP00847   Mean Expected Number 0.008   -strand    +28 :  +19   CCACCTCcTC
AC RSP01013   Mean Expected Number 0.005   -strand    +16 :   +7   CAAATGcAGA
AC RSP01014   Mean Expected Number 0.006   -strand    +16 :   +7   CAAATGcAGA

  Totally       6 motifs of     6 different REs have been found


Description of REs found

  130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2
  526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown
  550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown
  789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown
  938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
  939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF