> PLPR0195 ..AC:AF055898 ..OS:Zea mays ..GENE:alt ..PROD:alanine aminotransferase ..[ -200: +51] ..CDS:+69 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.16 G - 0.25 T - 0.22 C - 0.37
1 aaaccgcggc agtggtcggc ggccccccgg tctccttcca ctcgcttttc
51 cggcgggcga ctggcctaaa atcgcctctt gtttgtttgc ttccgtcgtc
101 ccctctccac gtagagcacg cccccggacc accttttata agcaccaacc
151 atctggcctt gccgcgccga ttcgccacga agccgcactg tgagagaggg
201 ACGCGGCCTG TTGTCCCGGC TTTTAGACGC AACTTCCATC GCTGCGAAGC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00040 Mean Expected Number 0.009 -strand -114 : -120 AACAAAC
AC RSP00189 Mean Expected Number 0.006 +strand -95 : -86 TCCACGTAGa
AC RSP00280 Mean Expected Number 0.005 +strand -95 : -86 TCCACGTAGA
AC RSP01210 Mean Expected Number 0.002 +strand -68 : -59 CTTTTaTAAG
AC RSP01259 Mean Expected Number 0.004 -strand -87 : -94 CTACGTGG
Totally 5 motifs of 5 different REs have been found
Description of REs found
39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown
183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5
271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1
1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs
1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1
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