> PLPR0199 ..AC:AF168391 ..OS:Arabidopsis thaliana ..GENE:RCP1 ..PROD:root cap 1 ..[ -200: +51] ..CDS:+19 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.28 C - 0.29
1 tttatatcct ctgttaccga aacttgaaga aaacaaaatc taggatcaat
51 acaaaagagc acatgatcat tgctacaatt aacgataata ccaaccgtcc
101 acgtgcatct ctttcccggc ccaagaacac tctcacttac atgatttcac
151 tgatgtaccc ttcttcttcc tcctctctgt tccaaaccca agtactacaa
201 TAATTCTCTC ACATTCCCAT GGAAGCTAAA GCCATCGCGA CGTCTCTCGG
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00421 Mean Expected Number 0.007 -strand +51 : +45 ACCGAGA
AC RSP00974 Mean Expected Number 0.002 +strand -103 : -94 TcCACGTGCA
AC RSP01003 Mean Expected Number 0.007 +strand -126 : -117 ACAATTAAcG
AC RSP01134 Mean Expected Number 0.007 +strand -22 : -13 GTTCCAaACC
AC RSP01776 Mean Expected Number 0.005 +strand -126 : -116 ACAATTAAcGA
Totally 5 motifs of 5 different REs have been found
Description of REs found
402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown
897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981
928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO
1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2
1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1
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