> PLPR0201 ..AC:AF192307 ..OS:Arabidopsis thaliana ..GENE:acyl-CoA binding protein 2 ..PROD:acyl-CoA binding protein 2 ..[ -200:  +51] ..CDS:+241 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.31   G -  0.15   T -  0.35   C -  0.19

      1  gaccacgatt ccaccacaaa atttgacatt gttattgaat tcattaactt
     51  ttttacgtgt tattgtgaaa tatttattta attttgttgg taaaaggagc
    101  aaaaaagatt agggtacaac acgtcgactt cttccCCAAT tagacccata
    151  tgtgatctgt cgtcactcgt cgccaagttt ttttatgtgt cgtcttttaa
    201  ACTTTGATCC AATTCATTAA AAAGTCTTAA CGCCCACAAC GAAAAGGAAC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00254   Mean Expected Number 0.008   -strand    +47 :  +41   CCTTTTC
AC RSP00750   Mean Expected Number 0.004   +strand   -141 : -130   TTATTGTgAAAT
AC RSP01261   Mean Expected Number 0.005   +strand   -148 : -141   TTACGTGT
AC RSP01304   Mean Expected Number 0.002   -strand    -83 :  -92   TGtACCCTAA

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC:  RSP00676
  712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1
 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1
 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format