> PLPR0202 ..AC:AF257186 ..OS:Arabidopsis thaliana ..GENE:DEX1 ..PROD:defective in exine formation ..[ -200: +51] ..CDS:+253 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.32 C - 0.20
1 gaaagtatca ccactccgat tctcatatca tatgtcaatc attttgattt
51 gaaatctttt catcgcattt tacatagaaa atcaagaacg gaaaggttaa
101 aaatcttcct tcgatcattc gaagtgatag ggaataATTG Acgtttctca
151 tatttgtaac taaacagcga gctgtgtcgt gcgttttact tagatcaaaa
201 CGGCAAGCAG TTTACTCTTC ACAGCGTCAT TCGATTTCGC CGGCTGCGAT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00572 Mean Expected Number 0.008 +strand -171 : -164 ATATGTCA
AC RSP00613 Mean Expected Number 0.007 +strand -120 : -113 ATCAAGAA
AC RSP00741 Mean Expected Number 0.001 +strand -110 : -99 gAAAGGTTAAAA
AC RSP01086 Mean Expected Number 0.009 +strand -63 : -54 TTgACGTTTC
AC RSP01127 Mean Expected Number 0.008 +strand +8 : +25 CAGT-- ** bp --AGCG
AC RSP01692 Mean Expected Number 0.005 +strand -91 : -84 TTCGATCA
Totally 6 motifs of 6 different REs have been found
Description of REs found
548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown
589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown
703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1
1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF
1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2
1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown
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