> PLPR0205 ..AC:AF339747 ..OS:Lophopyrum elongatum ..GENE:ESI47 ..PROD:protein kinase ..[ -200: +51] ..CDS:+515 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.25 G - 0.27 T - 0.18 C - 0.30
1 gcagcgagcg accaagcaag cagaaagaga cagcccgaag caggggccgg
51 ccatccattg acctactaac tacgcaatcc aatatccaaa tcccgtaccc
101 tgaaccagaa gcagccgcgt cttcttcctc ccaaccccat gtgggggagg
151 ctcagctagg tggctttgcc caggtgagca ggaaacgacc cgccccgtga
201 AGAGAGCTTC GTGTCTTTCA ACTTCTCTTG GGTTGGTTTT GGAGAACAAG
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00716 Mean Expected Number 0.000 -strand +41 : +33 CAAAACCAA
AC RSP00861 Mean Expected Number 0.001 +strand -179 : -171 AGAAAGAGA
AC RSP01454 Mean Expected Number 0.008 -strand +37 : +31 ACCAACC
Totally 3 motifs of 3 different REs have been found
Description of REs found
681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown
797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1
1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4
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