> PLPR0207 ..AC:AF368237 ..OS:Nicotiana tabacum ..GENE:zgt ..PROD:circadian clock coupling factor ZGT ..[ -200:  +51] ..CDS:+74 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.30   G -  0.16   T -  0.30   C -  0.24

      1  acacgtattc gttgagatat tttcgagccc caaaaaagat ggttaataaa
     51  ggacacgtgt cgcctagatc ctcacttgct tccacacact tactttgacc
    101  ctaagaaata tcatatccac aattgtctct atcatCCAAT gaaacagctc
    151  cacgtagcaa cattttttct atttgggggg taatgatagg cagttaattt
    201  ATCTATTCGT AGCCATCTAT ATATACAAGA GCCTTTGCCA GTAGCCGACC
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00143   Mean Expected Number 0.002   +strand   -149 : -140   GACaCGTGTC
AC RSP00143   Mean Expected Number 0.003   -strand   -140 : -149   GACaCGTGTC
AC RSP00189   Mean Expected Number 0.003   +strand    -52 :  -43   TCCACGTAGC
AC RSP00204   Mean Expected Number 0.002   +strand   -149 : -140   GACACGTGtC
AC RSP00204   Mean Expected Number 0.002   -strand   -140 : -149   GACACGTGtC
AC RSP00280   Mean Expected Number 0.007   +strand    -52 :  -43   TCCACGTAGc
AC RSP00479   Mean Expected Number 0.000   +strand   -151 : -138   AGGACACGTGTCGC
AC RSP00524   Mean Expected Number 0.010   +strand   -148 : -142   ACACGTG
AC RSP00524   Mean Expected Number 0.010   -strand   -141 : -147   ACACGTG
AC RSP00682   Mean Expected Number 0.002   -strand    -43 :  -52   GCtACGTGGA
AC RSP01035   Mean Expected Number 0.010   +strand   -146 : -140   ACGTGTC
AC RSP01035   Mean Expected Number 0.010   -strand   -143 : -149   ACGTGTC
AC RSP01209   Mean Expected Number 0.008   -strand   -163 : -172   CTTTTTTGGG
AC RSP01237   Mean Expected Number 0.009   +strand    +15 :  +24   aTCTATATAT
AC RSP01256   Mean Expected Number 0.003   +strand   -148 : -141   ACACGTGT
AC RSP01256   Mean Expected Number 0.003   -strand   -141 : -148   ACACGTGT
AC RSP01259   Mean Expected Number 0.002   -strand    -44 :  -51   CTACGTGG
AC RSP01274   Mean Expected Number 0.005   +strand    -52 :  -43   TCCACGTAgC
AC RSP01288   Mean Expected Number 0.005   -strand   -193 : -200   ATACGTGT

  Totally      19 motifs of    14 different REs have been found


Description of REs found

  139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1
  183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1
  457. Group RE: G-box /AC: RSP00479//OS: Nicotiana tabacum /GENE: ZGT/RE: G-box /TF: unknown
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs
 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown
 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1
 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown
 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown

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