> PLPR0207 ..AC:AF368237 ..OS:Nicotiana tabacum ..GENE:zgt ..PROD:circadian clock coupling factor ZGT ..[ -200: +51] ..CDS:+74 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.30 C - 0.24
1 acacgtattc gttgagatat tttcgagccc caaaaaagat ggttaataaa
51 ggacacgtgt cgcctagatc ctcacttgct tccacacact tactttgacc
101 ctaagaaata tcatatccac aattgtctct atcatCCAAT gaaacagctc
151 cacgtagcaa cattttttct atttgggggg taatgatagg cagttaattt
201 ATCTATTCGT AGCCATCTAT ATATACAAGA GCCTTTGCCA GTAGCCGACC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00143 Mean Expected Number 0.002 +strand -149 : -140 GACaCGTGTC
AC RSP00143 Mean Expected Number 0.003 -strand -140 : -149 GACaCGTGTC
AC RSP00189 Mean Expected Number 0.003 +strand -52 : -43 TCCACGTAGC
AC RSP00204 Mean Expected Number 0.002 +strand -149 : -140 GACACGTGtC
AC RSP00204 Mean Expected Number 0.002 -strand -140 : -149 GACACGTGtC
AC RSP00280 Mean Expected Number 0.007 +strand -52 : -43 TCCACGTAGc
AC RSP00479 Mean Expected Number 0.000 +strand -151 : -138 AGGACACGTGTCGC
AC RSP00524 Mean Expected Number 0.010 +strand -148 : -142 ACACGTG
AC RSP00524 Mean Expected Number 0.010 -strand -141 : -147 ACACGTG
AC RSP00682 Mean Expected Number 0.002 -strand -43 : -52 GCtACGTGGA
AC RSP01035 Mean Expected Number 0.010 +strand -146 : -140 ACGTGTC
AC RSP01035 Mean Expected Number 0.010 -strand -143 : -149 ACGTGTC
AC RSP01209 Mean Expected Number 0.008 -strand -163 : -172 CTTTTTTGGG
AC RSP01237 Mean Expected Number 0.009 +strand +15 : +24 aTCTATATAT
AC RSP01256 Mean Expected Number 0.003 +strand -148 : -141 ACACGTGT
AC RSP01256 Mean Expected Number 0.003 -strand -141 : -148 ACACGTGT
AC RSP01259 Mean Expected Number 0.002 -strand -44 : -51 CTACGTGG
AC RSP01274 Mean Expected Number 0.005 +strand -52 : -43 TCCACGTAgC
AC RSP01288 Mean Expected Number 0.005 -strand -193 : -200 ATACGTGT
Totally 19 motifs of 14 different REs have been found
Description of REs found
139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1
183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5
197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151
271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1
457. Group RE: G-box /AC: RSP00479//OS: Nicotiana tabacum /GENE: ZGT/RE: G-box /TF: unknown
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs
1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown
1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1
1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
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