> PLPR0208 ..AC:AF395819 ..OS:Oryza sativa ..GENE:Reb ..PROD:transcription activator REB ..[ -200: +51] ..CDS:+157 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.24 C - 0.29
1 caaactaccc tcacccagta gttacaaacg catattttgc cgttagttaa
51 ttattatccg gtaaagaagg taaagaagat tggtagtaat ccaaaatttt
101 cccaacccca acctcggaac aaaaaccgcg tagtatttgt cgtaaccagg
151 agcatccgag tcattaattt acacccaaac acaaaaaatt agcagcacgc
201 AGCCGCCTTC CCAATCCTCT CCTCTCTCCT CTCCTCTTCT CCAAGCGGCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00212 Mean Expected Number 0.005 -strand -145 : -153 TAATAATTA
AC RSP00653 Mean Expected Number 0.004 +strand +20 : +30 TcCTCTCTCCT
AC RSP00808 Mean Expected Number 0.006 +strand -159 : -153 GTTAGTT
AC RSP01347 Mean Expected Number 0.002 +strand -97 : -87 AACCCCAACCT
Totally 4 motifs of 4 different REs have been found
Description of REs found
205. Group TF: ATHB-2 /AC: RSP00212//OS: Arabidopsis thaliana /GENE: ATHB-2/RE: ATHB-2 BE /TF: ATHB-2
627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
761. Group TF: Pti4 /AC: RSP00808//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: Myb1 /TF: Pti4 ||Identical REs AC: RSP00810 RSP00812 RSP00813
1230. Group RE: IMH2 /AC: RSP01347//OS: Cucumis sativus /GENE: ICL/RE: IMH2 /TF: unknown
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