> PLPR0208 ..AC:AF395819 ..OS:Oryza sativa ..GENE:Reb ..PROD:transcription activator REB ..[ -200:  +51] ..CDS:+157 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.32   G -  0.14   T -  0.24   C -  0.29

      1  caaactaccc tcacccagta gttacaaacg catattttgc cgttagttaa
     51  ttattatccg gtaaagaagg taaagaagat tggtagtaat ccaaaatttt
    101  cccaacccca acctcggaac aaaaaccgcg tagtatttgt cgtaaccagg
    151  agcatccgag tcattaattt acacccaaac acaaaaaatt agcagcacgc
    201  AGCCGCCTTC CCAATCCTCT CCTCTCTCCT CTCCTCTTCT CCAAGCGGCA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00212   Mean Expected Number 0.005   -strand   -145 : -153   TAATAATTA
AC RSP00653   Mean Expected Number 0.004   +strand    +20 :  +30   TcCTCTCTCCT
AC RSP00808   Mean Expected Number 0.006   +strand   -159 : -153   GTTAGTT
AC RSP01347   Mean Expected Number 0.002   +strand    -97 :  -87   AACCCCAACCT

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  205. Group TF: ATHB-2 /AC: RSP00212//OS: Arabidopsis thaliana /GENE: ATHB-2/RE: ATHB-2 BE /TF: ATHB-2
  627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
  761. Group TF: Pti4 /AC: RSP00808//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: Myb1 /TF: Pti4 ||Identical REs AC:  RSP00810  RSP00812  RSP00813
 1230. Group RE: IMH2 /AC: RSP01347//OS: Cucumis sativus /GENE: ICL/RE: IMH2 /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format