> PLPR0209 ..AC:AJ010728 ..OS:Avena fatua ..GENE:alpha-Amy2A ..PROD:alpha amylase ..[ -200:  +51] ..CDS+1234 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.27   G -  0.19   T -  0.22   C -  0.33

      1  cgtgccaccc ctgattgact tgaccgtcat caatcaacta gtacctcttt
     51  tcccatgata ataacagagt ccggtacccg cgcattgcct ccaagcaacg
    101  ctccctatcc atggtacata cggcgtcgcg cgctcgcgta tgatcacatc
    151  ccccctcccT ATAAATAcca ggcacctagt acacttgtaa ccatcagcca
    201  ATCGACCAGC CAATCATTCA CTGGGAGAAG AAGACGAAGA AGAGCGTCTT
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00034   Mean Expected Number 0.000   +strand   -139 : -101   TAACAGA-- ** bp --CCAAGCAACg
AC RSP00509   Mean Expected Number 0.001   +strand    -41 :  -30   TATAAATACCAG
AC RSP00511   Mean Expected Number 0.000   +strand    -95 :  -77   TATCCATGGTACATACGGC
AC RSP00512   Mean Expected Number 0.000   +strand    -17 :  +19   CTTGTAACCATCAGCCAATCGACCAGCCAATCATTC
AC RSP00513   Mean Expected Number 0.000   +strand   -146 : -129   ATGATAATAACAGAGTCC
AC RSP00514   Mean Expected Number 0.000   +strand   -185 : -171   TGACTTGACCGTCAT
AC RSP00679   Mean Expected Number 0.000   +strand   -184 : -170   GACTTGACCgTCATC
AC RSP00680   Mean Expected Number 0.007   +strand   -139 : -130   TAACAGAGTC
AC RSP01293   Mean Expected Number 0.000   +strand   -189 : -171   tGATTGACTTGACCGTCAT
AC RSP01296   Mean Expected Number 0.001   +strand    -42 :  -34   CTATAAATA
AC RSP01298   Mean Expected Number 0.000   +strand   -189 : -171   tGATTGACTTGACCGTCAT
AC RSP01301   Mean Expected Number 0.000   +strand    -42 :  -33   CTATAAATAC

  Totally      12 motifs of    12 different REs have been found


Description of REs found

   33. Group RE: GARE-DAE /Group TF: GAMyb /AC: RSP00034//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE-DAE /TF: GAMyb ||Identical REs AC:  RSP00485  RSP00658  RSP00844  RSP00846  RSP00848  RSP00851
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
  487. Group RE: "TATCCAT" /AC: RSP00511//OS: Avena fatua /GENE: alpha-Amy2/A/RE: "TATCCAT" /TF: unknown
  488. Group RE: Inr /AC: RSP00512//OS: Avena fatua /GENE: alpha-Amy2/A/RE: Inr /TF: unknown
  489. Group RE: GARE /AC: RSP00513//OS: Avena fatua /GENE: alpha-Amy2/A/RE: GARE /TF: unknown
  490. Group RE: BOX 2 /AC: RSP00514//OS: Avena fatua /GENE: alpha-Amy2/A/RE: BOX 2 /TF: unknown
  648. Group RE: O2S /AC: RSP00679//OS: Hordeum vulgare /GENE: Amy32b/RE: O2S /TF: unknown
  649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown
 1190. Group RE: Box 2 /AC: RSP01293//OS: Avena fatua /GENE: Amy2/D/RE: Box 2 /TF: unknown ||Identical REs AC:  RSP01295
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1194. Group RE: Box 2 /AC: RSP01298//OS: Triticum aestivum /GENE: Amy2/54/RE: Box 2 /TF: unknown
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302