> PLPR0216 ..AC:X55970 ..OS:Arabidopsis thaliana ..GENE:photosystem II 10 kDa polypeptide ..PROD:photosystem II 10 kDa polypeptide ..[ -200:  +51] ..CDS:+51 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.35   G -  0.19   T -  0.25   C -  0.20

      1  ttgttttttt catctcctac gtggcattac gaaatgaaga aaaaactgat
     51  ctgacgggat ctgcttaacc agttgaagat aacgttagta aggaagatat
    101  ccagaccaaa gccacacaac attagccacg tgtcataacc ACAATcactt
    151  accggatctt ctctccctcg tatttgaagc cacacaacat gaacattagg
    201  GTGAGAAGAG ATCGAGAGAA GAATAGTTTG ATCATCTTGT GAGAAAAATA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00002   Mean Expected Number 0.000   -strand    -68 :  -76   ACACGTGGC
AC RSP00043   Mean Expected Number 0.002   +strand   -183 : -176   TACGTGGC
AC RSP00056   Mean Expected Number 0.003   +strand    -76 :  -67   GCCACgTGTC
AC RSP00073   Mean Expected Number 0.002   +strand    -76 :  -67   GCCACGTGtC
AC RSP00073   Mean Expected Number 0.002   -strand    -67 :  -76   GaCACGTGGC
AC RSP00175   Mean Expected Number 0.001   -strand    -69 :  -76   CACGTGGC
AC RSP00204   Mean Expected Number 0.002   -strand    -67 :  -76   GACACGTGGC
AC RSP00219   Mean Expected Number 0.000   -strand    -66 :  -77   TGACACGTGGCt
AC RSP00247   Mean Expected Number 0.003   -strand   -176 : -185   GCCACGTAgG
AC RSP00340   Mean Expected Number 0.003   +strand    -76 :  -67   gCCACGTGTC
AC RSP00524   Mean Expected Number 0.008   -strand    -68 :  -74   ACACGTG
AC RSP00936   Mean Expected Number 0.000   +strand    -77 :  -66   aGCCACGTGTCA
AC RSP01034   Mean Expected Number 0.006   +strand   -182 : -176   ACGTGGC
AC RSP01034   Mean Expected Number 0.007   -strand    -70 :  -76   ACGTGGC
AC RSP01035   Mean Expected Number 0.008   +strand    -73 :  -67   ACGTGTC
AC RSP01255   Mean Expected Number 0.002   -strand    -68 :  -75   ACACGTGG
AC RSP01259   Mean Expected Number 0.002   +strand   -184 : -177   CTACGTGG

  Totally      17 motifs of    15 different REs have been found


Description of REs found

    2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
   42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1
   55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3
   72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC:  RSP00274
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5
  240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC:  RSP00738
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
  960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1