> PLPR0218 ..AC:U75274 ..OS:Arabidopsis thaliana ..GENE:ACBP ..PROD:acyl-CoA binding protein ..[ -200: +51] ..CDS:+90 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.30 C - 0.18
1 cggattcgtc agttgtctct cgtcgcaacc attcaatcct acgtgtaatt
51 cctcagttgt ctctggtctt caacaaaaga caagcccaca aagagaaaac
101 aaaaaaaaag taaagaaaaa gaaaATTGTg aagcggtgaa aacaagagtt
151 ccaaaaaggt ggctcctttt tgtttctgga gatgcgttat tgtgaccctt
201 CTTTGAAATT TAGGGTTCAT TTTCTCAGAT TTCGAGTTCG TTGTGTTTGA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00021 Mean Expected Number 0.003 +strand -96 : -85 AAAAAGTAAAgA
AC RSP01017 Mean Expected Number 0.007 -strand -24 : -31 AGAAACAA
AC RSP01260 Mean Expected Number 0.003 +strand -162 : -155 CTACGTGT
AC RSP01303 Mean Expected Number 0.004 -strand +19 : +10 TgAACCCTAA
AC RSP01304 Mean Expected Number 0.003 -strand +19 : +10 TGAACCCTAA
AC RSP01600 Mean Expected Number 0.008 -strand +8 : +1 TTTCAAAG
Totally 6 motifs of 6 different REs have been found
Description of REs found
20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1
942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1
1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown
1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown
1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown
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