> PLPR0222 ..AC:Z18891 ..OS:Betula pendula ..GENE:BP8 ..PROD:BP8, embryogenic protein ..[ -200:  +51] ..CDS+1165 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.33   G -  0.25   T -  0.24   C -  0.18

      1  aagccacggg gctatctcag acgatctcaa gcggcacgtg tcatatctgc
     51  agcaaataag tcattacttg tgaggaatat gtatgtataa gctttataat
    101  agcttcacag agaggtatag agctagcaaa gccaaagtgt ttgaaaaatc
    151  tgactatatt tcagaattca gtgagacttt tgcgagtgtg aaatccatca
    201  ATGGCGTCTT CCAGGGAATT CAAGGAAAAG AGAGCCGAGG CAGCGGCGAA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00049   Mean Expected Number 0.003   +strand   -168 : -159   gGCACGTGTC
AC RSP00063   Mean Expected Number 0.002   -strand   -189 : -198   GCCcCGTGGC
AC RSP00066   Mean Expected Number 0.000   -strand   -162 : -170   ACGTGCCGC
AC RSP00073   Mean Expected Number 0.003   +strand   -198 : -189   GCCACGgGGC
AC RSP00073   Mean Expected Number 0.003   -strand   -189 : -198   GCCcCGTGGC
AC RSP00204   Mean Expected Number 0.002   -strand   -159 : -168   GACACGTGcC
AC RSP00524   Mean Expected Number 0.010   -strand   -160 : -166   ACACGTG
AC RSP00629   Mean Expected Number 0.010   +strand    -57 :  -50   AAAAATCT
AC RSP00894   Mean Expected Number 0.007   +strand    +17 :  +24   AATTCAAG
AC RSP01035   Mean Expected Number 0.010   +strand   -165 : -159   ACGTGTC
AC RSP01152   Mean Expected Number 0.003   -strand   -159 : -168   gACACGTGCC

  Totally      11 motifs of    10 different REs have been found


Description of REs found

   48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown
   62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown
   65. Group TF: EmBP-1 /AC: RSP00066//OS: Triticum aestivum /GENE: Em/RE: Em1b /TF: EmBP-1
   72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC:  RSP00274
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1
  825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family
  960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1)

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