> PLPR0223 ..AC:Y10657 ..OS:Chlorococcum littorale ..GENE:rca ..PROD:Rubisco activase ..[ -200:  +51] ..CDS:+29 ..TSS:201 (+1) |Taxon: Chlorophyta |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.25   G -  0.26   T -  0.25   C -  0.24

      1  tattagcaga cacgtggagg cgtggttgta acacagtgac aaagtaaaaa
     51  acattggaca aggcgtcaca gcatgagggg ccacgtgagg cgatcatcgc
    101  gtttgacacg ggccattttt tgagcacctc acgttcgtgg tcatacctct
    151  ttccggcgtt tggaaagccg cacttgtctg cattgcattc gcgttgagtg
    201  CCACTTTTCA AGCCTTGATC TTTCACCATG CAGATGCAGA TGAAGAACAC
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00021   Mean Expected Number 0.000   +strand   -162 : -151   AcAAAGTAAAAA
AC RSP00049   Mean Expected Number 0.007   +strand    -32 :  -23   CGCACtTGTC
AC RSP00056   Mean Expected Number 0.007   +strand     -1 :   +9   GCCACTTtTC
AC RSP00057   Mean Expected Number 0.008   -strand   -183 : -192   TCCACGTgTC
AC RSP00068   Mean Expected Number 0.007   +strand   -192 : -183   GACACGTgGA
AC RSP00153   Mean Expected Number 0.008   -strand   -113 : -122   tCACGTGGCC
AC RSP00175   Mean Expected Number 0.004   -strand   -114 : -121   CACGTGGC
AC RSP00188   Mean Expected Number 0.005   -strand   -183 : -192   TCcACGTGTC
AC RSP00204   Mean Expected Number 0.005   +strand   -192 : -183   GACACGTGGa
AC RSP00247   Mean Expected Number 0.007   +strand   -121 : -112   GCCACGTgAG
AC RSP00248   Mean Expected Number 0.007   +strand   -121 : -112   GCCACGTgAG
AC RSP00340   Mean Expected Number 0.008   -strand   -183 : -192   TCCACGTGTC
AC RSP00640   Mean Expected Number 0.004   -strand   -113 : -120   TCACGTGG
AC RSP00682   Mean Expected Number 0.005   +strand   -192 : -183   GaCACGTGGA
AC RSP00740   Mean Expected Number 0.000   +strand   -121 : -112   GCCACGTGAG
AC RSP01014   Mean Expected Number 0.004   +strand    +37 :  +46   CAgATGAAGA
AC RSP01255   Mean Expected Number 0.004   +strand   -191 : -184   ACACGTGG
AC RSP01274   Mean Expected Number 0.005   -strand   -183 : -192   TCCACGTgTC
AC RSP01722   Mean Expected Number 0.000   -strand   -182 : -193   cTCCACGTGTCT

  Totally      19 motifs of    19 different REs have been found


Description of REs found

   20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1
   48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown
   55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3
   56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF
   67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown
  149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC:  RSP00154
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC:  RSP00738
  241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC:  RSP00641
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  702. Group TF: G-box binding TF /AC: RSP00740//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 11 /TF: G-box binding TF
  939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown
 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5