> PLPR0228 ..AC:Y10182 ..OS:Catharanthus roseus ..GENE:str1 ..PROD:strictosidine synthase ..[ -200: +51] ..TSS:201 (+1) # Alternative TSS(s): -7 -5 -2 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.33 C - 0.22
1 taaaccgata aaaatatatt tatgatatat acaaaataaa ggaataaaag
51 aatgcataag tatattggat aagcctataa atattactcc acgtggtaca
101 tcactcttag accgccttct ttgaaagtga tttcccttgg accttgtttg
151 gtgagtttgt gggcttatta tattccttca ctgtccctct aagtatcaaa
201 CCATACCCCA TAGCTGCCCC TCTCTGCTTC ACTCCCATCA TTTACAGTCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00135 Mean Expected Number 0.002 -strand -183 : -194 tATATTTTTATC
AC RSP00224 Mean Expected Number 0.000 +strand -103 : -56 ACATCACTCTTAGACCGCCTTCTTTGAAAGTGATTTCCCTTGGACCTT
AC RSP00615 Mean Expected Number 0.009 -strand -46 : -51 CTCACC
AC RSP00682 Mean Expected Number 0.001 -strand -104 : -113 aCCACGTGGA
AC RSP00718 Mean Expected Number 0.001 +strand -112 : -105 CCACGTGG
AC RSP00718 Mean Expected Number 0.001 -strand -105 : -112 CCACGTGG
AC RSP00751 Mean Expected Number 0.001 +strand -199 : -188 AAACCGATAAAA
AC RSP00891 Mean Expected Number 0.008 +strand -190 : -182 AAAATATAT
AC RSP01033 Mean Expected Number 0.006 +strand -59 : -50 CCTTGTTTGG
AC RSP01175 Mean Expected Number 0.001 +strand +12 : +22 AGCTGCCCcTC
AC RSP01296 Mean Expected Number 0.005 +strand -126 : -118 CTATAAATA
AC RSP01600 Mean Expected Number 0.008 -strand -75 : -82 TTTCAAAG
AC RSP01611 Mean Expected Number 0.000 +strand -98 : -62 ACTCTTAGACCGCCTTCTTTGAAAGTGATTTCCCTTG
Totally 13 motifs of 12 different REs have been found
Description of REs found
131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown
217. Group TF: ORCA1; ORCA2; ORCA3 /AC: RSP00224//OS: Catharanthus roseus /GENE: Str/RE: JERE /TF: ORCA1; ORCA2; ORCA3
591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown
651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254
713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1
823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family
958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204
1086. Group TF: Zmhox1a /AC: RSP01175//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 2 /TF: Zmhox1a
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown
1431. Group TF: ZCT1/ZCT2/ZCT3 /AC: RSP01611//OS: Catharanthus roseus /GENE: STR/RE: ZCT BS /TF: ZCT1/ZCT2/ZCT3
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