> PLPR0228 ..AC:Y10182 ..OS:Catharanthus roseus ..GENE:str1 ..PROD:strictosidine synthase ..[ -200:  +51] ..TSS:201 (+1) # Alternative TSS(s):   -7   -5   -2 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.31   G -  0.14   T -  0.33   C -  0.22

      1  taaaccgata aaaatatatt tatgatatat acaaaataaa ggaataaaag
     51  aatgcataag tatattggat aagcctataa atattactcc acgtggtaca
    101  tcactcttag accgccttct ttgaaagtga tttcccttgg accttgtttg
    151  gtgagtttgt gggcttatta tattccttca ctgtccctct aagtatcaaa
    201  CCATACCCCA TAGCTGCCCC TCTCTGCTTC ACTCCCATCA TTTACAGTCA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00135   Mean Expected Number 0.002   -strand   -183 : -194   tATATTTTTATC
AC RSP00224   Mean Expected Number 0.000   +strand   -103 :  -56   ACATCACTCTTAGACCGCCTTCTTTGAAAGTGATTTCCCTTGGACCTT
AC RSP00615   Mean Expected Number 0.009   -strand    -46 :  -51   CTCACC
AC RSP00682   Mean Expected Number 0.001   -strand   -104 : -113   aCCACGTGGA
AC RSP00718   Mean Expected Number 0.001   +strand   -112 : -105   CCACGTGG
AC RSP00718   Mean Expected Number 0.001   -strand   -105 : -112   CCACGTGG
AC RSP00751   Mean Expected Number 0.001   +strand   -199 : -188   AAACCGATAAAA
AC RSP00891   Mean Expected Number 0.008   +strand   -190 : -182   AAAATATAT
AC RSP01033   Mean Expected Number 0.006   +strand    -59 :  -50   CCTTGTTTGG
AC RSP01175   Mean Expected Number 0.001   +strand    +12 :  +22   AGCTGCCCcTC
AC RSP01296   Mean Expected Number 0.005   +strand   -126 : -118   CTATAAATA
AC RSP01600   Mean Expected Number 0.008   -strand    -75 :  -82   TTTCAAAG
AC RSP01611   Mean Expected Number 0.000   +strand    -98 :  -62   ACTCTTAGACCGCCTTCTTTGAAAGTGATTTCCCTTG

  Totally      13 motifs of    12 different REs have been found


Description of REs found

  131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown
  217. Group TF: ORCA1; ORCA2; ORCA3 /AC: RSP00224//OS: Catharanthus roseus /GENE: Str/RE: JERE /TF: ORCA1; ORCA2; ORCA3
  591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC:  RSP01254
  713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1
  823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family
  958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC:  RSP01204
 1086. Group TF: Zmhox1a /AC: RSP01175//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 2 /TF: Zmhox1a
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown
 1431. Group TF: ZCT1/ZCT2/ZCT3 /AC: RSP01611//OS: Catharanthus roseus /GENE: STR/RE: ZCT BS /TF: ZCT1/ZCT2/ZCT3

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