> PLPR0234 ..AC:X77175 X77165 ..OS:Lycopersicon esculentum ..GENE:SOD Cp;Le:1 ..PROD:chloroplastic Cu, Zn superoxid dismutase ..[ -200: +51] ..CDS+1224 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.43 G - 0.10 T - 0.27 C - 0.20
1 aaaaaaaaaa ttatataaga atatcataaa gtaattatta tgtccaaatt
51 gttaacccaa aaatgaacat taaaaatgtc aaatagatct tgcaaactga
101 caaaatctaa gaaaaacccc ataaaaactc aaaagataaa atcttgtttc
151 actgctatct aaaacattat cattttatca attcatcatt gtgggaggag
201 GCATGGCCGC CCACTCAATC TTCACCACAA CCAGCACTAC CAATTCTTTC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00122 Mean Expected Number 0.000 -strand -4 : -10 CTCCCAC
AC RSP00438 Mean Expected Number 0.004 -strand +11 : +6 GGCGGC
AC RSP00807 Mean Expected Number 0.004 +strand +6 : +11 GCCGCC
AC RSP00998 Mean Expected Number 0.001 +strand -39 : -26 AAACaTTATCATTT
Totally 4 motifs of 4 different REs have been found
Description of REs found
120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown
418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown
760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328
919. Group TF: 3AF5 /AC: RSP00998//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 5'-III element /TF: 3AF5
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