> PLPR0235 ..AC:X58253 ..OS:Lycopersicon esculentum ..GENE:ubi3 ..PROD:ubiquitin ..[ -200: +51] ..CDS:+67 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.21 C - 0.22
1 gacgcaccaa ttgatataga aaacgtaata ttgaaaacta atgtaaagaa
51 aagtaacttg atcctaaact aatcaagata agcccaataa atatacattg
101 tcatctccaa aggcccaaaa atggcacaag atggcaggcC CAATaacgaa
151 gaaaagggct tgtaaaaccc taataaagtg gcactggcag agcttacact
201 TTCATTCCAT CAACAAAAGA AACCCTAGAA GCCGCAGTGC CACTGATTTC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00279 Mean Expected Number 0.006 -strand -28 : -36 TTAGGGTTT
AC RSP00369 Mean Expected Number 0.006 +strand -36 : -28 AAACCCTAA
AC RSP01303 Mean Expected Number 0.009 +strand -37 : -28 aAAACCCTAA
Totally 3 motifs of 3 different REs have been found
Description of REs found
270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448
354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown
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