> PLPR0237 ..AC:L08425 ..OS:Zea mays ..GENE:Zm-ER abp1 ..PROD:auxin-binding protein ..[ -200: +51] ..CDS:+321 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.34 C - 0.20
1 catcttttga tgctatatat acaaagatgg tgcttttgat ggtatgtatc
51 caacaagtgg ttcttttaat agtgtagatc caattttctc taagggtgca
101 ttcgtttatg ccggatttgg tccagaatca ttccagctcA TTGActctta
151 tataaattaa acaaacaatc cagctaggaa tcattccggg tgctcaatcc
201 ACTGGAACCG AACAAGCCCT ACATATATGC CGGTTGGATT CTTGTTGCCT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00522 Mean Expected Number 0.008 -strand -141 : -147 CCACTTG
AC RSP00566 Mean Expected Number 0.009 -strand -175 : -184 CtTTGTATAT
AC RSP01091 Mean Expected Number 0.010 -strand -185 : -195 ATAGcATCAAA
Totally 3 motifs of 3 different REs have been found
Description of REs found
498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown
1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown
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