> PLPR0237 ..AC:L08425 ..OS:Zea mays ..GENE:Zm-ER abp1 ..PROD:auxin-binding protein ..[ -200:  +51] ..CDS:+321 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.27   G -  0.19   T -  0.34   C -  0.20

      1  catcttttga tgctatatat acaaagatgg tgcttttgat ggtatgtatc
     51  caacaagtgg ttcttttaat agtgtagatc caattttctc taagggtgca
    101  ttcgtttatg ccggatttgg tccagaatca ttccagctcA TTGActctta
    151  tataaattaa acaaacaatc cagctaggaa tcattccggg tgctcaatcc
    201  ACTGGAACCG AACAAGCCCT ACATATATGC CGGTTGGATT CTTGTTGCCT
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00522   Mean Expected Number 0.008   -strand   -141 : -147   CCACTTG
AC RSP00566   Mean Expected Number 0.009   -strand   -175 : -184   CtTTGTATAT
AC RSP01091   Mean Expected Number 0.010   -strand   -185 : -195   ATAGcATCAAA

  Totally       3 motifs of     3 different REs have been found


Description of REs found

  498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
  542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown
 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format