> PLPR0239 ..AC:U33175 ..OS:Oryza sativa ..GENE:SPS1 ..PROD:sucrose phosphate synthase ..[ -200:  +51] ..TSS:201 (+1) # Alternative TSS(s):   +3 |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.21   G -  0.22   T -  0.16   C -  0.41

      1  tttcagtttg taaccaccgg atgacgcacg gacggctcgg atcatcccga
     51  aaagatcaac cgcggcgcga gcacgagacc accgtgggcc ccatggccca
    101  ccgacttacA CAATctctcc cactgccatg cgggcccaca ccagcaacag
    151  tccagtccag agagccccga actcctccaa acccgggggg ccacaccctg
    201  CCACGTGTCA CCCGCCAGCC TCCCTCTCAT CCTCTCTCTC CTCGTCCAGT
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00002   Mean Expected Number 0.001   -strand     +8 :   -1   ACACGTGGC
AC RSP00056   Mean Expected Number 0.009   +strand     -1 :   +9   GCCACgTGTC
AC RSP00095   Mean Expected Number 0.007   -strand    -62 :  -70   GTGGGCCCG
AC RSP00175   Mean Expected Number 0.006   -strand     +7 :   -1   CACGTGGC
AC RSP00204   Mean Expected Number 0.007   -strand     +9 :   -1   GACACGTGGC
AC RSP00219   Mean Expected Number 0.001   -strand    +10 :   -2   TGACACGTGGCA
AC RSP00340   Mean Expected Number 0.009   +strand     -1 :   +9   gCCACGTGTC
AC RSP00653   Mean Expected Number 0.002   +strand    +32 :  +42   cTCTCTCTCCT
AC RSP00697   Mean Expected Number 0.007   +strand   -195 : -190   GTTTGT
AC RSP00842   Mean Expected Number 0.004   +strand   -165 : -158   CTCGGATC
AC RSP00865   Mean Expected Number 0.002   -strand    +41 :  +33   GGAGAGAGA
AC RSP00936   Mean Expected Number 0.001   +strand     -2 :  +10   TGCCACGTGTCA
AC RSP01255   Mean Expected Number 0.004   -strand     +8 :   +1   ACACGTGG
AC RSP01589   Mean Expected Number 0.000   +strand     -1 :  +12   GCCACGTGTCACC

  Totally      14 motifs of    14 different REs have been found


Description of REs found

    2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
   55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3
   93. Group TF: GCBP-2 /AC: RSP00095//OS: Zea mays /GENE: GapC4/RE: GCBP-2 BS /TF: GCBP-2
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
  663. Group RE: Box II /AC: RSP00697//OS: Brassica oleracea /GENE: SLG13/RE: Box II /TF: unknown ||Identical REs AC:  RSP00762  RSP00767  RSP00772  RSP00777
  787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown
  801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
  865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
 1412. Group TF: GBF /AC: RSP01589//OS: Glycine max /GENE: SRS-1/RE: G box /TF: GBF