> PLPR0240 ..AC:M60951 ..OS:Pisum sativum ..GENE:CL22 ..PROD:ribosomal protein CL22 ..[ -200: +51] ..CDS:+54 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.44 G - 0.12 T - 0.36 C - 0.08
1 aagagtattt aaaaattaaa tttaaaataa atttcattct taatactttt
51 tgttttgggt tgttaaataa tataaaaaga attaattgaa aagtaaataa
101 aagaacagaa aaaaaattat tttcaaataa gtttacttaa tttaaaagta
151 aataaaagaa cagaaaaaat aagaagaggg ataagttgat atgttttcat
201 TTGTTATCCA TCCAGTCTTA TCTTAGGTTT TTCATTCACT CATCATCATC
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00227 Mean Expected Number 0.002 -strand +24 : +16 AAGATAAGA
AC RSP01014 Mean Expected Number 0.005 -strand +3 : -7 CAAATGAAaA
AC RSP01015 Mean Expected Number 0.005 -strand +3 : -7 CAAATGAAAa
AC RSP01195 Mean Expected Number 0.005 -strand -83 : -95 AATtTTTTTTCTG
Totally 4 motifs of 4 different REs have been found
Description of REs found
220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1
939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF
940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF
1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown
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