> PLPR0242 ..AC:D29966 ..OS:Oryza sativa ..GENE:CatA ..PROD:catalase ..[ -200: +51] ..CDS:+32 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.22 G - 0.23 T - 0.20 C - 0.35
1 accttatcct cgtccagttc ctgtgggacc caaccatgca gtatggccac
51 ccgggcccac cagtcagtgt gtggcaccgg tctccggtaa gctcaccggg
101 gaggtcagtg ctcctcacca cctcccgcta tataaccttt aggcaggctg
151 tctcaccgag caagctggag agctagcaga aacaaacccc tctcactccc
201 AGATACCTGC TGCTGCCACT AGCCCACTAC CATGGATCCT TGCAAGGTCA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00095 Mean Expected Number 0.004 -strand -141 : -149 GTGGGCCCG
AC RSP00146 Mean Expected Number 0.004 -strand -66 : -72 TTATATA
AC RSP00535 Mean Expected Number 0.000 -strand -57 : -72 GCCT-- +6 bp --TATATA
AC RSP01017 Mean Expected Number 0.002 +strand -23 : -16 AGAAACAA
Totally 4 motifs of 4 different REs have been found
Description of REs found
93. Group TF: GCBP-2 /AC: RSP00095//OS: Zea mays /GENE: GapC4/RE: GCBP-2 BS /TF: GCBP-2
142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown
942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
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