> PLPR0245 ..AC:S77096 ..OS:Brassica napus ..GENE:btg-26 ..PROD:aldehyde dehydrogenase related protein ..[ -200: +51] ..CDS:+47 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.25 G - 0.13 T - 0.37 C - 0.25
1 caacagctca gctttcgttt tcggtccaat cgctgttcca actttactta
51 caagtcgtac acgtctctct ctctctctct ctctctcact cacttcctct
101 tataaagact ctctgatcaa acgtataatc ggaaaactcc attctttgat
151 accatcgata atactaagag aggtgattga ttctttaatc actgtttgat
201 ATCCTTAACT TTGATCCATT TACTCTGTTC AATCATTTTT GTAGAGATGG
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00864 Mean Expected Number 0.007 -strand -115 : -123 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.007 -strand -117 : -125 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.007 -strand -119 : -127 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.007 -strand -121 : -129 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.007 -strand -123 : -131 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.007 -strand -125 : -133 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.007 -strand -127 : -135 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.007 -strand -129 : -137 AGAGAGAGA
AC RSP01071 Mean Expected Number 0.006 +strand -83 : -74 CAAACGTAtA
AC RSP01283 Mean Expected Number 0.000 -strand -114 : -130 GAGAGAGAGAGAGAGAg
AC RSP01283 Mean Expected Number 0.000 -strand -116 : -132 GAGAGAGAGAGAGAGAg
AC RSP01283 Mean Expected Number 0.000 -strand -118 : -134 GAGAGAGAGAGAGAGAg
AC RSP01283 Mean Expected Number 0.000 -strand -120 : -136 GAGAGAGAGAGAGAGAg
AC RSP01283 Mean Expected Number 0.000 -strand -122 : -138 GAGAGAGAGAGAGAGAc
Totally 14 motifs of 3 different REs have been found
Description of REs found
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153
1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown
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