> PLPR0246 ..AC:X72927 ..OS:Solanum commersonii ..GENE:OLP ..PROD:osmotin-like protein ..[ -200: +51] ..CDS:+34 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.33 C - 0.18
1 agttttagga aaaaagtccg tcacgttaca gagttcataa aataattaat
51 tattaggcgg ctcttacttc aacctttacc aacgcatatt ttaatatttt
101 tcgtttataa ttagtcaaag tatgatactg tgttatatat gattaataaa
151 aatccatagt gccaaaagcc gccatacccc tatataaagt accaaaaaat
201 AATTTGTCCT CATATAAATT TCAACACATT AACATGGGCT ACTTGAGATC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00030 Mean Expected Number 0.001 +strand -34 : -28 AGCCGCC
AC RSP00030 Mean Expected Number 0.001 -strand -139 : -145 AGCCGCC
AC RSP00176 Mean Expected Number 0.000 -strand -135 : -145 TAAGAGCCGCC
AC RSP00438 Mean Expected Number 0.002 +strand -145 : -140 GGCGGC
AC RSP00438 Mean Expected Number 0.004 -strand -28 : -33 GGCGGC
AC RSP00807 Mean Expected Number 0.004 +strand -33 : -28 GCCGCC
AC RSP00807 Mean Expected Number 0.002 -strand -140 : -145 GCCGCC
AC RSP00923 Mean Expected Number 0.000 +strand -37 : -24 AAAAGCCGCCAtAC
AC RSP00928 Mean Expected Number 0.000 +strand -43 : -20 AGTGCCAAAAGCCGCCAtACCCCT
AC RSP01011 Mean Expected Number 0.000 +strand -34 : -26 AGCCGCCAT
AC RSP01322 Mean Expected Number 0.000 -strand -135 : -145 TAAGAGCCGCC
AC RSP01323 Mean Expected Number 0.000 -strand -135 : -145 TAAGAGCCGCC
AC RSP01687 Mean Expected Number 0.006 -strand -30 : -36 CGGCTTT
Totally 13 motifs of 10 different REs have been found
Description of REs found
29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775
170. Group RE: GCC-box /Group TF: EREBP /AC: RSP00176//OS: Nicotiana tabacum; arabidopsis (Arabidopsis thaliana) /GENE: CHN48/RE: GCC-box /TF: EREBP ||Identical REs AC: RSP01320 RSP01321 RSP01324 RSP01325 RSP01341
418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown
760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328
852. Group TF: LeERF1; LeERF2; LeERF3; LeERF4 /AC: RSP00923//OS: Lycopersicon esculentum /GENE: Le-osmotin/RE: GCC-box/ERE /TF: LeERF1; LeERF2; LeERF3; LeERF4
857. Group RE: GCC box /Group TF: CaERFLP1 /AC: RSP00928//OS: Capsicum annuum /GENE: GCC box-containing genes/RE: GCC box /TF: CaERFLP1 ||Identical REs AC: RSP01400
936. Group TF: AtEBP /AC: RSP01011//OS: Arabidopsis thaliana /GENE: rd29A/RE: AtEBP BS /TF: AtEBP
1212. Group RE: GCCGCC-ERE /AC: RSP01322//OS: Nicotiana tabacum /GENE: CHN50/RE: GCCGCC-ERE /TF: unknown
1213. Group RE: GCCGCC-ERE /AC: RSP01323//OS: Nicotiana tabacum /GENE: GLN2/RE: GCCGCC-ERE /TF: unknown
1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown
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