> PLPR0247 ..AC:U55278 ..OS:Lycopersicon esculentum ..GENE:DCL ..PROD:DCL ..[ -200: +51] ..CDS:+160 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.36 C - 0.20
1 gatacatttt ctacctctta gttttcaatt tattatccta tagaatagat
51 aaattacata ataagaaaaa agtgagaatt ttattttttt ggtttgtcta
101 atgtacttgc ccgaatccgt accatatcca aatatgcaga atccagccag
151 ggaataaagc ggtcagcttt cttctttaca catatcttct tcttcttctt
201 CATGGTAAAG CAGCAGTTAG TTTTCAGCAC TGTACAGTAC TTCGCCACGA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00431 Mean Expected Number 0.009 +strand +9 : +20 AGCaGCAGTTAG
AC RSP00445 Mean Expected Number 0.006 +strand -135 : -126 AAAAAAGtGA
Totally 2 motifs of 2 different REs have been found
Description of REs found
411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77
425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1
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