> PLPR0248 ..AC:X58453 ..OS:Solanum tuberosum ..GENE:waxy ..PROD:glycogen (starch)  synthase ..[ -200:  +51] ..CDS:+279 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.28   G -  0.17   T -  0.26   C -  0.29

      1  ttgcaaggcc caagttgaag tccagccgtg aatcaacaaa gagagggccc
     51  ataatactgt cgatgagcat ttccctataa tacagtgtcc acagttgcct
    101  tccgctaagg gatagccacc cgctattctc ttgacacgtg tcactgaaac
    151  ctgcTACAAA TAaggcaggc acctcctcat tctcacactc actcacacag
    201  CTCAACAAGT GGTAACTTTT ACTCATCTCC TCCAATTATT TCTGATTTCA
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00143   Mean Expected Number 0.003   +strand    -68 :  -59   GACaCGTGTC
AC RSP00143   Mean Expected Number 0.006   -strand    -59 :  -68   GACaCGTGTC
AC RSP00204   Mean Expected Number 0.002   +strand    -68 :  -59   GACACGTGtC
AC RSP00204   Mean Expected Number 0.003   -strand    -59 :  -68   GACACGTGtC
AC RSP00219   Mean Expected Number 0.000   +strand    -69 :  -58   TGACACGTGtCA
AC RSP00219   Mean Expected Number 0.000   -strand    -58 :  -69   TGACACGTGtCA
AC RSP00431   Mean Expected Number 0.009   +strand   -114 : -103   GTCcACAGTTGC
AC RSP00445   Mean Expected Number 0.005   +strand   -166 : -157   AAcAAAGAGA
AC RSP00522   Mean Expected Number 0.007   -strand    +12 :   +6   CCACTTG
AC RSP00756   Mean Expected Number 0.009   +strand    -19 :  -12   CTCACACT
AC RSP00936   Mean Expected Number 0.000   +strand    -69 :  -58   TGaCACGTGTCA
AC RSP00936   Mean Expected Number 0.000   -strand    -58 :  -69   TGaCACGTGTCA
AC RSP01003   Mean Expected Number 0.007   +strand    -45 :  -36   ACAAaTAAGG
AC RSP01256   Mean Expected Number 0.003   +strand    -67 :  -60   ACACGTGT
AC RSP01256   Mean Expected Number 0.003   -strand    -60 :  -67   ACACGTGT

  Totally      15 motifs of    10 different REs have been found


Description of REs found

  139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5
  411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77
  425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1
  498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
  718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown
  865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF
  928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO
 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1