> PLPR0250 ..AC:AJ237897 ..OS:Triticum aestivum ..GENE:sbe1 ..PROD:starch branching enzyme I ..[ -200: +51] ..CDS:+23 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.12 G - 0.20 T - 0.20 C - 0.47
1 tccgcttctc cctcgccccc gtttccccct ccctccctct cgttgcttcc
51 actccactgt tctcctcccc tgtccaaagc ggccacggac cggaaaaaat
101 cacggctttc cgttgcgtct ccggcgccac actcctcctc ctcctccctc
151 cggccgcTAT AAAGCgcgcc gggccacggg ccccgcggac aatgggatcc
201 CCGTCCGCCG CCATCGACGA AGATGCTCTG CCTCACCGCC TCCTCCTCGC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00004 Mean Expected Number 0.002 -strand -38 : -43 TTTATA
AC RSP00147 Mean Expected Number 0.002 +strand -43 : -38 TATAAA
AC RSP00735 Mean Expected Number 0.000 +strand -106 : -99 AAAAATCA
AC SP017556 Mean Expected Number 0.008 +strand +11 : +18 CCATCGAC
Totally 4 motifs of 4 different REs have been found
Description of REs found
4. Group RE: Motif g /AC: RSP00004//OS: Pisum sativum /GENE: PSPAL2/RE: Motif g /TF: unknown
143. Group RE: TATA2 /AC: RSP00147//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA2 /TF: unknown
698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1
1561. Group TF: C1 /AC: SP017556//OS: Glycine max /GENE: a2/RE: C1BS2 /TF: C1
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