> PLPR0253 ..AC:Z54358 ..OS:Zea mays ..GENE:cat2 ..PROD:cat2 ..[ -200: +51] ..CDS+1165 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.18 G - 0.27 T - 0.20 C - 0.34
1 cttcgctagg cttatccggc aacaaacaaa acctgcgctt tttttttctg
51 gaggacggcg cgcgccggtg agcgtgtgga tgaggcgcgg cctacagcag
101 aacccaccca gtcgagggca aaaagagcct cctcccccgt cactcgttgc
151 tccggcTATA TATAacgacc ggcgctatcc gtgtcgcagc ctcctcgcag
201 GTGACCTTGC GTACGTACGT CGTAGCGGCT CGTCCAGCTC GCTCGCCACC
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00040 Mean Expected Number 0.006 +strand -180 : -174 AACAAAC
AC RSP00146 Mean Expected Number 0.002 -strand -36 : -42 TTATATA
AC RSP00379 Mean Expected Number 0.009 -strand -20 : -29 CGGATAGcGC
AC RSP01174 Mean Expected Number 0.008 +strand -70 : -60 CCTCcCCCGTC
Totally 4 motifs of 4 different REs have been found
Description of REs found
39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown
142. Group RE: TATA1 /AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA1 /TF: unknown
364. Group RE: LS7 /AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS7 /TF: unknown
1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a
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