> PLPR0254 ..AC:U32636 ..OS:Zea mays ..GENE:Y1 ..PROD:phytoene synthase ..[ -200:  +51] ..CDS:+14 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.23   G -  0.24   T -  0.21   C -  0.33

      1  ccaaaaagcg ggcttcgtgc cgggctcacg ggcctcgtgc tttttggcca
     51  tctatgagcc gcacacttag catacatacg caagaagagg agaggccgga
    101  ggtgcgcgtg ctccttgctg ctgttctgct gactggtctc accatctcat
    151  ctcatcccac caccaccacc accaccacca ccaccaccat ctttaggata
    201  AGATAGCAAA TATATGGCCA TCATACTCGT ACGAGCAGCG TCGCCGGGGC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00462   Mean Expected Number 0.000   -strand    -44 :  -56   GGATGAGATgAGA
AC RSP00722   Mean Expected Number 0.007   +strand     -4 :   +3   GATAAGA
AC RSP00913   Mean Expected Number 0.005   -strand    -50 :  -59   GATGAGATGG
AC RSP00914   Mean Expected Number 0.005   -strand    -50 :  -59   GATGAGATGG
AC RSP00937   Mean Expected Number 0.000   +strand    -56 :  -44   TCTcATCTCATCC
AC RSP01053   Mean Expected Number 0.000   +strand     -4 :   +5   GATAAGATA

  Totally       6 motifs of     6 different REs have been found


Description of REs found

  440. Group RE: I-box /Group TF: IBF /AC: RSP00462//OS: Lycopersicon esculentum /GENE: RBCS1; RBCS2; RBCS3A;/RE: I-box /TF: IBF
  687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown
  844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2
  845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2
  866. Group TF: GBF /AC: RSP00937//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: I box /TF: GBF
  973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1