> PLPR0256 ..AC:X58024, M31713 X14207/..OS:Pisum sativum ..GENE:Fed-1 ..PROD:ferredoxin I precursor ..[ -200: +51] ..CDS:+97 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.31 C - 0.20
1 tatgaagact tgagtaatta gttaccacag tgcacaatac ttcattttta
51 aatactataa ggtgaagatg gtgccaacaa ggattcacca acaatatgtg
101 gtgataaaag agatagataa cctgaggcat aaaACAATgc cacctggcag
151 atagggttgc atgcagttca tatagcagct tgttccaacc acactatttc
201 CACAAGCTCC TTATTTCATT CATTCATTCA TTCTCTATCT TTTTATCATC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00073 Mean Expected Number 0.001 +strand -62 : -53 GCCACcTGGC
AC RSP00073 Mean Expected Number 0.001 -strand -53 : -62 GCCAgGTGGC
AC RSP00778 Mean Expected Number 0.004 -strand +30 : +21 TGAATGAATG
AC RSP00778 Mean Expected Number 0.004 -strand +26 : +17 TGAATGAATG
AC RSP00878 Mean Expected Number 0.001 -strand -54 : -61 CCAGGTGG
AC RSP01379 Mean Expected Number 0.000 +strand -87 : -52 TAGATAACC-- ** bp --GCCACCTGGCA
AC RSP01379 Mean Expected Number 0.000 +strand -62 : -45 GCCACCTGGCA-- +0 bp --GATAGGG
Totally 7 motifs of 5 different REs have been found
Description of REs found
72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274
733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown
814. Group TF: RPCF-1 /AC: RSP00878//OS: Arabidopsis thaliana /GENE: PCNA/RE: Site I /TF: RPCF-1
1263. Group RE: fed-CMA1 I-box - G-box] /AC: RSP01379//OS: Pisum sativum /GENE: Fd-1/RE: fed-CMA1 I-box - G-box] /TF: unknown
1300. Group RE: fed-CMA1 [G-box - I-box-like motif] /AC: RSP01379//OS: Pisum sativum /GENE: Fd-1/RE: fed-CMA1 [G-box - I-box-like motif] /TF: unknown
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