> PLPR0256 ..AC:X58024, M31713 X14207/..OS:Pisum sativum ..GENE:Fed-1 ..PROD:ferredoxin I precursor ..[ -200:  +51] ..CDS:+97 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.33   G -  0.16   T -  0.31   C -  0.20

      1  tatgaagact tgagtaatta gttaccacag tgcacaatac ttcattttta
     51  aatactataa ggtgaagatg gtgccaacaa ggattcacca acaatatgtg
    101  gtgataaaag agatagataa cctgaggcat aaaACAATgc cacctggcag
    151  atagggttgc atgcagttca tatagcagct tgttccaacc acactatttc
    201  CACAAGCTCC TTATTTCATT CATTCATTCA TTCTCTATCT TTTTATCATC
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00073   Mean Expected Number 0.001   +strand    -62 :  -53   GCCACcTGGC
AC RSP00073   Mean Expected Number 0.001   -strand    -53 :  -62   GCCAgGTGGC
AC RSP00778   Mean Expected Number 0.004   -strand    +30 :  +21   TGAATGAATG
AC RSP00778   Mean Expected Number 0.004   -strand    +26 :  +17   TGAATGAATG
AC RSP00878   Mean Expected Number 0.001   -strand    -54 :  -61   CCAGGTGG
AC RSP01379   Mean Expected Number 0.000   +strand    -87 :  -52   TAGATAACC-- ** bp --GCCACCTGGCA
AC RSP01379   Mean Expected Number 0.000   +strand    -62 :  -45   GCCACCTGGCA-- +0 bp --GATAGGG

  Totally       7 motifs of     5 different REs have been found


Description of REs found

   72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC:  RSP00274
  733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown
  814. Group TF: RPCF-1 /AC: RSP00878//OS: Arabidopsis thaliana /GENE: PCNA/RE: Site I /TF: RPCF-1
 1263. Group RE: fed-CMA1 I-box - G-box] /AC: RSP01379//OS: Pisum sativum /GENE: Fd-1/RE: fed-CMA1 I-box - G-box] /TF: unknown
 1300. Group RE: fed-CMA1 [G-box - I-box-like motif] /AC: RSP01379//OS: Pisum sativum /GENE: Fd-1/RE: fed-CMA1 [G-box - I-box-like motif] /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format