> PLPR0257 ..AC:X74734 ..OS:Arabidopsis thaliana ..GENE:eEF-1beta ..PROD:unnamed ..[ -200: +51] ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.24 G - 0.18 T - 0.44 C - 0.14
1 cctcaaatta ttgcaacttt gggattatgt gattagaatt taaatttcgg
51 tgtttgtgaa tctaaatcta gttgattagc attcttattg ttgttcatac
101 gttttaacCC AATggttcgt cttttagatc ttctgttgtc atgatctggt
151 tttatgaaat agaaagttcg tttttgatga atcgttggta ggttttttcc
201 TTACTTGATC TGATCTGATC TGATCTCTCT GCTTTATATC AGTGAAAAAG
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00145 Mean Expected Number 0.008 +strand -95 : -90 AACCCA
AC RSP00235 Mean Expected Number 0.001 +strand -97 : -86 TTAAcCCAATGG
AC RSP00550 Mean Expected Number 0.008 +strand -180 : -170 gGGATTATGTG
AC RSP00651 Mean Expected Number 0.003 -strand -8 : -18 ACCTACCAACg
AC RSP00746 Mean Expected Number 0.001 -strand -88 : -99 ATtGGGTTAAAA
AC RSP01711 Mean Expected Number 0.008 -strand -130 : -139 CTAGATTTAG
Totally 6 motifs of 6 different REs have been found
Description of REs found
141. Group TF: SEF3 /AC: RSP00145//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 2 /TF: SEF3 ||Identical REs AC: RSP00338
228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS
526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown
625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1
708. Group TF: GT-1 /AC: RSP00746//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 6 /TF: GT-1
1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN
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