> PLPR0260 ..AC:AJ223471 ..OS:Zea mays ..GENE:PHYT II ..PROD:phytase ..[ -200: +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.33 C - 0.20
1 tctactatta tattcactct aaatcatatg tgttaatact agagtaccta
51 aacaaggtct taagtgcatg cacgtgctgc acgctgttat ggacctatta
101 ggtagtagta ggtcgagtag gatatatatc acaaagttgt atacctataa
151 atagctcgct ttgataacat gatctgctgc cttatacgaa acatagctac
201 CTACTACTCA AGTATCCATC CTTATTGTAA GTGCTCTTAT AAGCTACTAC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00016 Mean Expected Number 0.010 +strand -134 : -128 CATGCAC
AC RSP00016 Mean Expected Number 0.007 -strand -131 : -137 CATGCAC
AC RSP00817 Mean Expected Number 0.004 +strand -132 : -123 TgCACGTGCT
AC RSP01296 Mean Expected Number 0.005 +strand -56 : -48 CTATAAATA
AC RSP01469 Mean Expected Number 0.009 +strand -177 : -168 TCAtATGTGT
Totally 5 motifs of 4 different REs have been found
Description of REs found
15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown
763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
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