> PLPR0262 ..AC:U60136 ..OS:Arabidopsis thaliana ..GENE:serine/threonine protein phosphatase 2A-4 catalytic subunit gene ..PROD:the same as gene name ..[ -200:  +51] ..TSS:201 (+1) # Alternative TSS(s):   -3   +4 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.33   G -  0.19   T -  0.26   C -  0.22

      1  gtgtgtatta cctatttaaa cacttttata agaaaactaa agggtgtttt
     51  agtcaattta tcatttagat ctcaacgagg aggatataat ggtcaaatca
    101  agacacagct cgaaagctac aaacccactc gcccctttac ctcacgcgcc
    151  cctttgtttt gatttcctct ctcactctgc acacgaaggc gagagagaga
    201  GAGAAAGAAA AAAGCGAAGA ATACGCAGAA TCCATCCAAT TTAGGGTTAG
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00260   Mean Expected Number 0.010   +strand    +40 :  +46   TTTAGGG
AC RSP00467   Mean Expected Number 0.003   +strand   -111 : -102   TGGTCAAATC
AC RSP00860   Mean Expected Number 0.004   +strand     +2 :  +10   AGAAAGAAA
AC RSP00863   Mean Expected Number 0.001   -strand    -29 :  -37   AGAGAGGAA
AC RSP00864   Mean Expected Number 0.001   +strand     -9 :   -1   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   +strand     -7 :   +2   AGAGAGAGA
AC RSP00864   Mean Expected Number 0.001   +strand     -5 :   +4   AGAGAGAGA
AC RSP01210   Mean Expected Number 0.006   +strand   -178 : -169   CTTTTATAAG
AC RSP01283   Mean Expected Number 0.000   +strand    -12 :   +5   GcGAGAGAGAGAGAGAA
AC RSP01283   Mean Expected Number 0.000   +strand     -8 :   +9   GAGAGAGAGAGAaAGAA

  Totally      10 motifs of     7 different REs have been found


Description of REs found

  253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown
  445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown
  796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1
  799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1
  800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs
 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown