> PLPR0267 ..AC:D86388 ..OS:Catharanthus roseus ..GENE:CYM ..PROD:B-type cyclin ..[ -200: +51] ..TSS+1630 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.25 C - 0.24
1 cttcaaacgg taacttttga acagttgcaa cggctaaata gaggcaaaag
51 aaagcgcaat tgccaattcg gcagtcacat ttacaaccgt ccgatcagac
101 ttttaatcca acggttcaga cttgaacaag aataagaccg ttgggggaca
151 gaagcgcctc ttcttcagct tcaaaaagac cctcttttct tggttttttc
201 AAGTCTCATT CATAGTCTTC ACTCCCCCAC AGATAGAAAG GGATCGAGAA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00249 Mean Expected Number 0.001 +strand -66 : -58 AGACCGTTG
AC RSP01209 Mean Expected Number 0.003 +strand -17 : -8 CTTTTCTTGG
AC RSP01505 Mean Expected Number 0.001 -strand -105 : -113 GATCGGACG
Totally 3 motifs of 3 different REs have been found
Description of REs found
242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown
1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs
1362. Group RE: NonaLS /AC: RSP01505//OS: Triticum aestivum /GENE: H1 (TH315)/RE: NonaLS /TF: unknown ||Identical REs AC: RSP01506
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