> PLPR0268 ..AC:AY770501 ..OS:Sesamum indicum ..GENE: microsomal oleic acid desaturase gen ..PROD:microsomal oleic acid desaturase ..[ -200: +51] ..CDS:+1747 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.26 G - 0.29 T - 0.20 C - 0.24
1 atttccttga acacacaatg tggaatgtgc acactccatg tgggccaatg
51 agcggatgac acgtggcggg caacttacct cgttacgttg aggcatgcat
101 gaaaggggga tctcttgagg tggaggggtg ggggcggggg ttgggggggg
151 gcccctcctc agacaggtcT ATATTTAtga gacctcgtaa ggcagaacgc
201 AACGCCACTC AAATATTTCA CCACCACCAC CACCAGAACA TTCAGAAACA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00002 Mean Expected Number 0.001 +strand -142 : -134 ACACGTGGC
AC RSP00073 Mean Expected Number 0.010 +strand -143 : -134 GaCACGTGGC
AC RSP00073 Mean Expected Number 0.010 -strand -134 : -143 GCCACGTGtC
AC RSP00078 Mean Expected Number 0.001 -strand -54 : -65 CCcCCAACCCCC
AC RSP00108 Mean Expected Number 0.003 +strand -107 : -100 CATGCATG
AC RSP00108 Mean Expected Number 0.003 -strand -100 : -107 CATGCATG
AC RSP00175 Mean Expected Number 0.005 +strand -141 : -134 CACGTGGC
AC RSP00204 Mean Expected Number 0.006 +strand -143 : -134 GACACGTGGC
AC RSP00219 Mean Expected Number 0.001 +strand -144 : -133 TGACACGTGGCg
AC RSP00621 Mean Expected Number 0.000 +strand -49 : -41 CCCCTCCTC
AC RSP00936 Mean Expected Number 0.001 -strand -133 : -144 cGCCACGTGTCA
AC RSP01017 Mean Expected Number 0.006 +strand +44 : +51 AGAAACAA
AC RSP01074 Mean Expected Number 0.002 +strand -108 : -99 GCATGCATGa
AC RSP01074 Mean Expected Number 0.002 -strand -99 : -108 tCATGCATGC
AC RSP01255 Mean Expected Number 0.005 +strand -142 : -135 ACACGTGG
AC RSP01446 Mean Expected Number 0.000 +strand -174 : -151 GTGCACACTCCATGTGGGCCAATG
AC RSP01447 Mean Expected Number 0.000 +strand -149 : -126 GCGGATGACACGTGGCGGGCAACT
AC RSP01465 Mean Expected Number 0.000 -strand -152 : -162 ATTGGCCCACA
AC RSP01470 Mean Expected Number 0.007 -strand -99 : -108 TCATGCATGc
Totally 19 motifs of 16 different REs have been found
Description of REs found
2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274
77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown
106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452
169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570
197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151
212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5
597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown
865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF
942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF
992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf
1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
1319. Group TF: SebHLH /AC: RSP01446//OS: sesame, Sesamum indicum /GENE: FAD2/RE: SeFAD2P-E /TF: SebHLH
1320. Group TF: SebHLH /AC: RSP01447//OS: sesame, Sesamum indicum /GENE: FAD2/RE: SeFAD2P-G /TF: SebHLH ||Identical REs AC: RSP01448
1335. Group RE: ERSE-II /AC: RSP01465//OS: Glycine max /GENE: BiP6/RE: ERSE-II /TF: unknown
1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)
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