> PLPR0269 ..AC:X60135 ..OS:Zea mays ..GENE:cat1 ..PROD:catalase-1 ..[ -200:  +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.22   G -  0.28   T -  0.22   C -  0.28

      1  ctgcaaatgg gtgttatgtc tgttcccctc gtctctgcaa gtaggccacc
     51  ctcgccgacg ggctgaatca tgtaaccaag aagtccacgt ggaggtggaa
    101  gaggGCAATa tggacagcga ggagagcacg aaaccaccgc cgtgccgtgc
    151  cagtgccatc ctccctccat tgtttcccgg ctctccgtcc cttgggagtt
    201  GGGCCTTGGC ATTTCCTTAA GATAAAAAAG GGGGGAAATC GGCTTCCTAC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00280   Mean Expected Number 0.007   +strand   -117 : -108   TCCACGTgGA
AC RSP00280   Mean Expected Number 0.007   -strand   -108 : -117   TCCACGTgGA
AC RSP00358   Mean Expected Number 0.004   -strand     +1 :   -7   CAACTCCC
AC RSP00461   Mean Expected Number 0.000   +strand   -121 : -103   GAAGTCCACGTGGAGGTGG
AC RSP00682   Mean Expected Number 0.006   +strand   -117 : -108   tCCACGTGGA
AC RSP00682   Mean Expected Number 0.006   -strand   -108 : -117   tCCACGTGGA
AC RSP00718   Mean Expected Number 0.006   +strand   -116 : -109   CCACGTGG
AC RSP00718   Mean Expected Number 0.006   -strand   -109 : -116   CCACGTGG

  Totally       8 motifs of     5 different REs have been found


Description of REs found

  271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1
  343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown
  439. Group RE: ABRE2 /Group TF: CBF1 /AC: RSP00461//OS: Zea mays /GENE: Cat1/RE: ABRE2 /TF: CBF1
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC:  RSP01254

Download This Page
Download Promoter Sequence in FASTA Format