> PLPR0269 ..AC:X60135 ..OS:Zea mays ..GENE:cat1 ..PROD:catalase-1 ..[ -200: +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.22 G - 0.28 T - 0.22 C - 0.28
1 ctgcaaatgg gtgttatgtc tgttcccctc gtctctgcaa gtaggccacc
51 ctcgccgacg ggctgaatca tgtaaccaag aagtccacgt ggaggtggaa
101 gaggGCAATa tggacagcga ggagagcacg aaaccaccgc cgtgccgtgc
151 cagtgccatc ctccctccat tgtttcccgg ctctccgtcc cttgggagtt
201 GGGCCTTGGC ATTTCCTTAA GATAAAAAAG GGGGGAAATC GGCTTCCTAC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00280 Mean Expected Number 0.007 +strand -117 : -108 TCCACGTgGA
AC RSP00280 Mean Expected Number 0.007 -strand -108 : -117 TCCACGTgGA
AC RSP00358 Mean Expected Number 0.004 -strand +1 : -7 CAACTCCC
AC RSP00461 Mean Expected Number 0.000 +strand -121 : -103 GAAGTCCACGTGGAGGTGG
AC RSP00682 Mean Expected Number 0.006 +strand -117 : -108 tCCACGTGGA
AC RSP00682 Mean Expected Number 0.006 -strand -108 : -117 tCCACGTGGA
AC RSP00718 Mean Expected Number 0.006 +strand -116 : -109 CCACGTGG
AC RSP00718 Mean Expected Number 0.006 -strand -109 : -116 CCACGTGG
Totally 8 motifs of 5 different REs have been found
Description of REs found
271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1
343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown
439. Group RE: ABRE2 /Group TF: CBF1 /AC: RSP00461//OS: Zea mays /GENE: Cat1/RE: ABRE2 /TF: CBF1
651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254
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