> PLPR0272 ..AC:X04333 ..OS:Pisum sativum ..GENE:rbcS-3A ..PROD:ribulose bisphosphate carboxylase ..[ -200:  +51] ..CDS:+17 ..TSS:201 (+1) # Alternative TSS(s):  -12  -10   -8   -4   -2 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.37   G -  0.17   T -  0.30   C -  0.16

      1  ggcttatgat aaggctagca cacaaaattt caaatcttgt gtggttaata
     51  tggctgcaaa ctttatcatt ttcactatct aacaagattg gtactaggca
    101  gtagctaagt accACAATat taagaccata atattggaaa tagataaata
    151  aaaacatTAT ATATAgcaag ttttagcaga agctttgcaa ttcatacaga
    201  AGTGAGAAAA ATGGCTTCTA TGATATCCTC TTCAGCTGTG ACTACAGTCA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00037   Mean Expected Number 0.000   +strand    -63 :  -43   AAATAGATAAATAAAAACATT
AC RSP00205   Mean Expected Number 0.000   +strand   -162 : -149   GTGTGGTTAATATG
AC RSP00228   Mean Expected Number 0.001   +strand   -136 : -125   ATCATTTTCACT
AC RSP00627   Mean Expected Number 0.002   +strand   -195 : -187   ATGATAAGG
AC RSP00713   Mean Expected Number 0.006   -strand    +38 :  +32   CAGCTGA
AC RSP00942   Mean Expected Number 0.000   +strand   -162 : -148   GTGTGGTTAATATGG
AC RSP00998   Mean Expected Number 0.000   +strand   -143 : -130   AAACTTTATCATTT
AC RSP00999   Mean Expected Number 0.005   +strand   -129 : -119   TCACTATCTAA
AC RSP01333   Mean Expected Number 0.000   +strand   -163 : -149   TGTGTGGTTAATATG

  Totally       9 motifs of     9 different REs have been found


Description of REs found

   36. Group TF: 3AF1 /AC: RSP00037//OS: Pisum sativum /GENE: rbcS-3A/RE: Box VI /TF: 3AF1 ||Identical REs AC:  RSP01398
  198. Group TF: GT-1 /AC: RSP00205//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II /TF: GT-1
  221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1
  603. Group TF: GAF-1 /AC: RSP00627//OS: Pisum sativum /GENE: rbcS-3A/RE: GA-1 SITE /TF: GAF-1
  679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC
  871. Group TF: GBF /AC: RSP00942//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II /TF: GBF ||Identical REs AC:  RSP01595
  919. Group TF: 3AF5 /AC: RSP00998//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 5'-III element /TF: 3AF5
  920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3
 1218. Group TF: BGTF /AC: RSP01333//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: BGTF BS (Box II, wild) /TF: BGTF