> PLPR0273 ..AC:X02868 ..OS:Nicotiana plumbaginifolia ..GENE:atp2-1 ..PROD:ATP synthase beta subunit ..[ -200: +51] ..CDS:+55 ..TSS:201 (+1) # Alternative TSS(s): -48 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.27 C - 0.24
1 gtgtggagca catatttgaa aacataagga tgcccaaatt attcgccaaa
51 taagttggaa taaaagcgaa aaaggaaaac aaagaagaaa aagaacaaat
101 tcaaatgctc ctcggttttt taagcacagt aaatcagtaa tcggatcaca
151 aagtgggctc ttgatatatc agctcttcac aaaccctagc agtctctttc
201 TCTCCTTTCT CTCTCTACTC CTTTCACTCT CTCTCTAGCC AAACCCTCCA
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00861 Mean Expected Number 0.001 -strand +1 : -8 AGAAAGAGA
AC RSP00864 Mean Expected Number 0.001 -strand +36 : +28 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.001 -strand +16 : +8 AGAGAGAGA
AC RSP01599 Mean Expected Number 0.009 -strand -180 : -187 TTTCAAAT
Totally 4 motifs of 3 different REs have been found
Description of REs found
797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown
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