> PLPR0274 ..AC:X53675 S54871 ..OS:Triticum aestivum ..GENE:POX1 ..PROD:putative peroxidase ..[ -200: +51] ..CDS:+58 ..TSS+1287 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.28 G - 0.22 T - 0.25 C - 0.24
1 gatcgtcagc catcatagac caatcgacca tctgttatgg atgcttgcta
51 gctagactag tcagacataa aatttggata ctttctccca actgggagac
101 ggggactgat gtgcagctgc acgtgagcta aatttttccc tataaatatg
151 catgaaatac tgcattatct tgccacagcc actgccacag ccagataaca
201 AGTGCAGCTG GTAGCACGCA ACGCATAGCT CTGGACTTGT AGCTAGGTAG
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00057 Mean Expected Number 0.006 -strand -96 : -105 TCCcCGTCTC
AC RSP00337 Mean Expected Number 0.007 -strand -52 : -60 ATATTTATA
AC RSP00503 Mean Expected Number 0.004 +strand -153 : -146 CTAGCTAG
AC RSP00503 Mean Expected Number 0.004 -strand -146 : -153 CTAGCTAG
AC RSP01296 Mean Expected Number 0.002 +strand -61 : -53 CTATAAATA
AC RSP01470 Mean Expected Number 0.009 -strand -46 : -55 TCATGCATaT
AC RSP01499 Mean Expected Number 0.007 -strand -95 : -104 gTCCCCGTCT
Totally 7 motifs of 6 different REs have been found
Description of REs found
56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF
323. Group TF: SEF1 /AC: RSP00337//OS: Glycine max /GENE: beta-conglicinin (7S globulin) alpha' and beta subunits genes/RE: SEF1 BS /TF: SEF1
479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)
1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500
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