> PLPR0276 ..AC:U27982 ..OS:Arabidopsis thaliana ..GENE:ACT12 ..PROD:actin-12 ..[ -200: +51] ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.31 C - 0.22
1 gacccgattc ttccggtaaa acagagccta aaccgtattt tcaggttagg
51 ctggtgtttt cttaattctc caacctaaaa atagatggac acgtgtctat
101 agaggctgag atattggtcT CAATgaagaa aactaacggc tcagacccgt
151 gtatgaacga tattaagggc caaagttgct tctgttttcc agaaattttt
201 GAAACCCAAT TTCAGGGCAC GATTCCACAA CCTCTTTCTT TTCTTCTAGA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00143 Mean Expected Number 0.003 +strand -113 : -104 GACaCGTGTC
AC RSP00143 Mean Expected Number 0.003 -strand -104 : -113 GACaCGTGTC
AC RSP00204 Mean Expected Number 0.002 +strand -113 : -104 GACACGTGtC
AC RSP00204 Mean Expected Number 0.002 -strand -104 : -113 GACACGTGtC
AC RSP00230 Mean Expected Number 0.008 -strand -149 : -158 AgCCTAACCT
AC RSP01256 Mean Expected Number 0.003 +strand -112 : -105 ACACGTGT
AC RSP01256 Mean Expected Number 0.003 -strand -105 : -112 ACACGTGT
AC RSP01708 Mean Expected Number 0.010 +strand -126 : -117 CTAAAAATAG
AC RSP01708 Mean Expected Number 0.010 -strand -117 : -126 CTATTTTTAG
Totally 9 motifs of 5 different REs have been found
Description of REs found
139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1
197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151
223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1
1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN
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