> PLPR0277 ..AC:X17031 ..OS:Spinacia oleracea ..GENE:nir ..PROD:nitrate reductase..[ -200: +51] ..CDS:+146 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.26 G - 0.13 T - 0.30 C - 0.31
1 acacaacatt acatattata tctagcacca tactataatg gttggcggct
51 agaggcagtc tgccctttta gccgctagtt ttgggtgtga atggccatcc
101 aacgtaacca aacatacaaa atgaccctta accatgtcca agagtcccct
151 cttaactctt cccaccttgt gcttattact agtttccaca ctccctcacc
201 GTTTGTCCTT CTCCTCTTTC TCTCTCCTCA ATCACCCTAC ATAAAAATAC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00030 Mean Expected Number 0.002 -strand -151 : -157 AGCCGCC
AC RSP00144 Mean Expected Number 0.006 -strand -114 : -119 CACCCA
AC RSP00263 Mean Expected Number 0.002 +strand -105 : -97 CATCCAACG
AC RSP00438 Mean Expected Number 0.006 +strand -157 : -152 GGCGGC
AC RSP00653 Mean Expected Number 0.001 +strand +18 : +28 TTCTCTCTCCT
AC RSP00807 Mean Expected Number 0.006 -strand -152 : -157 GCCGCC
AC RSP00865 Mean Expected Number 0.006 -strand +27 : +19 GGAGAGAGA
Totally 7 motifs of 7 different REs have been found
Description of REs found
29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775
140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3
255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563
418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown
627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328
801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
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