> PLPR0280 ..AC:M64682 ..OS:Spinacia oleracea ..GENE:GT3 ..PROD:nuclear-encoded plastid ribosomal protein L21 ..[ -200: +51] ..CDS:+118 ..TSS:201 (+1) ..NOTE: Promoter P1 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.24 C - 0.22
1 gaataacata atataaccca attattaacc aacctgaact taaatcgggt
51 tacaaattta tactcgagtg gcacttctag ttctagttac caatccaaat
101 ggacaaatgg tattatggta cataacccaa atggtattat ccaacctgaa
151 caagtcgaac aacccgttta acaaaaactc gaggggctaa agttgtcatt
201 TGAGCCAAAC CGGATAGGAT AGAGTGATAA ACCCCCGACT CCAGCAACAA
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00332 Mean Expected Number 0.003 +strand -94 : -87 ATGGTATT
AC RSP00332 Mean Expected Number 0.003 +strand -70 : -63 ATGGTATT
AC RSP00633 Mean Expected Number 0.001 -strand -168 : -180 GTTGGTTAATAAT
AC RSP00953 Mean Expected Number 0.003 +strand -182 : -174 CAATTATTA
AC RSP01013 Mean Expected Number 0.009 +strand -105 : -96 CAAATGGAcA
AC RSP01477 Mean Expected Number 0.000 +strand -22 : +3 TCGAGGGGCTAAAGTTGTCATTTGA
AC RSP01598 Mean Expected Number 0.003 +strand -7 : +1 TGTCATTT
AC RSP01639 Mean Expected Number 0.005 +strand -10 : -1 AGTTGTCATT
Totally 8 motifs of 7 different REs have been found
Description of REs found
318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F
609. Group TF: S2F /AC: RSP00633//OS: Spinacia oleracea /GENE: RPL21/RE: CV /TF: S2F
880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6
938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
1345. Group RE: BC-1 /AC: RSP01477//OS: Spinacia oleracea /GENE: RPL21/RE: BC-1 /TF: unknown
1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown
1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown
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