> PLPR0283 ..AC:U64816 ..OS:Nicotiana tabacum ..GENE:Sar8.2b ..PROD:protein involved in systematic acquired resistance..[ -200: +51] ..CDS:+43 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.34 C - 0.21
1 aactctgact gaggagactg ctagtgaggg aatccatctc aggtttctta
51 tgtgggaaat cactcgccca actaactcag tctaccttgg cgtgcgtgac
101 tttaaagtaa gtcttttgtg aaggctttcc tttttgtcat ttttctccct
151 tgttcagagc aagttgttcT ATAAATAggg gagaaacatt atttcccttt
201 TCACAGCAAA AAATTAAAAC TCGATATAGC TCATCTTTCA AAATGTTTTC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00960 Mean Expected Number 0.004 +strand -132 : -125 CAACTAAC
AC RSP01016 Mean Expected Number 0.004 +strand -19 : -12 AGAAACAT
AC RSP01185 Mean Expected Number 0.001 +strand -133 : -122 CCAACTAACTCa
AC RSP01296 Mean Expected Number 0.003 +strand -32 : -24 CTATAAATA
Totally 4 motifs of 4 different REs have been found
Description of REs found
885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB
941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF
1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
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