> PLPR0285 ..AC:U79156 ..OS:Arabidopsis thaliana ..GENE:CCA1 ..PROD:Myb-related transcription factor ..[ -200:  +51] ..CDS:+322 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.30   G -  0.20   T -  0.33   C -  0.16

      1  cctttcaggt agtcccggaa ctcgtggcct agaatacaaa gaaggttgtg
     51  aacaagttga tgttaagatg gacaagaatg taacttgaac aaaagctgaa
    101  tcatctcttc agccactagt atgttgacat atggcagttt cttttgtagc
    151  ctcgaAATAA ATAaattaaa aagtttgagg ttaaagataa ttatagtggc
    201  TGAGATTTCT CCATTTCCGT AGCTTCTGGT CTCTTTTCTT TGTTTCATTG
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00572   Mean Expected Number 0.008   -strand    -69 :  -76   ATATGTCA
AC RSP00857   Mean Expected Number 0.007   -strand   -130 : -139   CCATCTtAAC
AC RSP00918   Mean Expected Number 0.007   +strand   -145 : -136   GTTGATGTTA
AC RSP01013   Mean Expected Number 0.006   -strand    +17 :   +8   gAAATGGAGA

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown
  793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown
  849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2
  938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF