> PLPR0287 ..AC:AB012641 ..OS:Nicotiana sylvestris ..GENE:Lhcb1*8 ..PROD:chlorophyll a/b-binding protein ..[ -200: +51] ..CDS:+73 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.33 C - 0.14
1 caacattgag ttagattttc tagacataat aatgtatcta aatatatcta
51 ctcatgttgt tgaactttga caaatggaca agaatgcaaa cgttaaacaa
101 ATTGTtatct tccaatgaga aaacagataa tgatattcta agataatgac
151 ttaagtgttt tggagtcaTT TAAATAcatt tggtgcaaga ccatgaaact
201 CAAGCCAAAA ATCAAGTATT CTTTGTGTAG TATAGCTTCA TTCAAGAGTT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00405 Mean Expected Number 0.004 +strand -42 : -35 TTTGGAGT
AC RSP00962 Mean Expected Number 0.010 -strand -147 : -153 TGAGTAG
AC RSP01013 Mean Expected Number 0.007 +strand -130 : -121 CAAATGGAcA
Totally 3 motifs of 3 different REs have been found
Description of REs found
387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown
887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown
938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
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