> PLPR0288 ..AC:AB012641 ..OS:Nicotiana sylvestris ..GENE:Lhcb1*3 ..PROD:chlorophyll a/b-binding protein ..[ -200:  +51] ..CDS:+60 ..TSS:201 (+1) # Alternative TSS(s):-5,-1,+3,+4 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.31   G -  0.16   T -  0.31   C -  0.22

      1  catgggatcg aggacaacat tggtttgagc cccctattaa aaatattgga
     51  aaattgatgg tttacagatt gccaagcgcg caggaactgc tgtccatatg
    101  aaatcttgaa gcCCAATcag atcattgata tagatatcac tagataagga
    151  ctctttccct cttactttcT ATGTATAatg aagccagaat aacttcagtt
    201  CATCACAACT AACTTTGACA TCTTAAACTA GCAACCTCTT ACTTTCCTCT
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00125   Mean Expected Number 0.002   -strand   -154 : -165   AATATTTTTAaT
AC RSP00574   Mean Expected Number 0.008   +strand    -16 :   -9   CAGAATAA
AC RSP00960   Mean Expected Number 0.008   +strand     +6 :  +13   CAACTAAC
AC RSP01711   Mean Expected Number 0.008   -strand    +31 :  +22   CTAGTTTAAG

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC:  RSP00133  RSP00788
  550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown
  885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB
 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN

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