> PLPR0288 ..AC:AB012641 ..OS:Nicotiana sylvestris ..GENE:Lhcb1*3 ..PROD:chlorophyll a/b-binding protein ..[ -200: +51] ..CDS:+60 ..TSS:201 (+1) # Alternative TSS(s):-5,-1,+3,+4 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.31 C - 0.22
1 catgggatcg aggacaacat tggtttgagc cccctattaa aaatattgga
51 aaattgatgg tttacagatt gccaagcgcg caggaactgc tgtccatatg
101 aaatcttgaa gcCCAATcag atcattgata tagatatcac tagataagga
151 ctctttccct cttactttcT ATGTATAatg aagccagaat aacttcagtt
201 CATCACAACT AACTTTGACA TCTTAAACTA GCAACCTCTT ACTTTCCTCT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00125 Mean Expected Number 0.002 -strand -154 : -165 AATATTTTTAaT
AC RSP00574 Mean Expected Number 0.008 +strand -16 : -9 CAGAATAA
AC RSP00960 Mean Expected Number 0.008 +strand +6 : +13 CAACTAAC
AC RSP01711 Mean Expected Number 0.008 -strand +31 : +22 CTAGTTTAAG
Totally 4 motifs of 4 different REs have been found
Description of REs found
123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788
550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown
885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB
1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN
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