> PLPR0295 ..AC:U44838 ..OS:Glycine max ..GENE:SbHRGP3 ..PROD:extensin ..[ -200: +51] ..CDS:+14 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.27 C - 0.22
1 tctatctaat ccaaatccgc gttccacaac caacttggtc caaaaaactc
51 aatatcaata ttttcaaaat agttttagca ttgtttagga agagaattgt
101 aagagataaa atctaagtac tccacctacc aagataaaat agttggataa
151 atgggtaaaa aagttgTATA AAGGgcaaca ctacctctcc taatggcagt
201 ACCAAAACCC AAGATGGGGT CTCCAATGGC CTCTCTTACT CTCACTATTG
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00079 Mean Expected Number 0.006 +strand -80 : -71 tCCACCTACC
AC RSP00253 Mean Expected Number 0.002 +strand -187 : -180 AATCCGCG
AC RSP01094 Mean Expected Number 0.002 +strand -61 : -50 TAgTTGGATAAA
AC RSP01577 Mean Expected Number 0.008 -strand -112 : -121 cCTAAACAAT
Totally 4 motifs of 4 different REs have been found
Description of REs found
78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420
246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504
1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1
1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579
Download This Page
Download Promoter Sequence in FASTA Format