> PLPR0298 ..AC:U17436 ..OS:Medicago sativa ..GENE:IFR ..PROD:isoflavone reductase ..[ -200:  +51] ..CDS:+93 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.39   G -  0.16   T -  0.28   C -  0.17

      1  ctactaatat gttttatacg gagttaatta agtagactta agagaaggcg
     51  tcaattttga ccaacagggc tgcttctatt tcaacaacaa tgaatattaa
    101  atttggtcac taaaacacac agagagtagt agatggATTG Aagttggtgg
    151  caatccaagt ttgtccTATA AATAtcaaac aaagtatagc tattcatcac
    201  ACACTCACTA CTACTTTGGT AACGTATTCA AAACAAGAAA AAACAGACAA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00383   Mean Expected Number 0.009   -strand   -139 : -145   GGTCAAA
AC RSP00654   Mean Expected Number 0.002   -strand    -52 :  -61   CACCaACTTC
AC RSP01296   Mean Expected Number 0.008   +strand    -35 :  -27   CTATAAATA

  Totally       3 motifs of     3 different REs have been found


Description of REs found

  368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1
  628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF

Download This Page
Download Promoter Sequence in FASTA Format