> PLPR0299 ..AC:U16727 ..OS:Medicago truncatula ..GENE:rip1 ..PROD:Rhizobium-induced peroxidase ..[ -200:  +51] ..CDS:+29 ..TSS:201 (+1) # Alternative TSS(s):-4 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.38   G -  0.15   T -  0.29   C -  0.18

      1  gaccaaaagt ggaagaatct gaaattacag ggacaaaatc taaatctttt
     51  tttttacagg gactgaaacc ggaattcgct aatattatag ggacgaaaag
    101  aggtatttac ccataaaaat ATTGAtaatt acataaatta aaccagtgag
    151  ccttgtacct catctcTATA TAAAtcatct cttagactaa gttaagagtc
    201  ATATCTTAGC CAAAAGAAAC ATCACATAAT GGCTTCTAGT TCTCCTTGTC
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00125   Mean Expected Number 0.008   -strand    -78 :  -89   AATATTTTTATg
AC RSP00135   Mean Expected Number 0.004   -strand    -78 :  -89   AATATTTTTATg
AC RSP00270   Mean Expected Number 0.004   -strand   -188 : -198   TcCACTTTTGG
AC RSP00559   Mean Expected Number 0.007   -strand   -172 : -182   TGTAATTTCAG

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC:  RSP00133  RSP00788
  131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown
  262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1
  535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown