> PLPR0304 ..AC:X00043 ..OS:Triticum aestivum ..GENE: H4 ..PROD:histone H4 ..[ -200:  +51]  ..CDS:  +68 |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.20   G -  0.16   T -  0.15   C -  0.49

      1  aaatttcgag ctgccgccac agctctgacc cagcccgcca aaccaccggt
     51  ccaatctctc ggccacgtca ccgatccgcg gcatctctcc cccggatcgc
    101  cgtctcgacc gtccactcca tccgcatcca acggcagcca cacgcctcct
    151  ccaacctctc gaccccttta agacgccctt cgccccaccc agcaaatcac
    201  AGCACCAGAC GCCACCCACC ACCGTTCCTC CCATCCCACA CTCGCTCGCA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00060   Mean Expected Number 0.006   +strand    -61 :  -50   ACaCGCCTCCTC
AC RSP00113   Mean Expected Number 0.002   -strand   -131 : -139   TGACGTGGC
AC RSP00263   Mean Expected Number 0.003   +strand    -76 :  -68   CATCCAACG
AC RSP00278   Mean Expected Number 0.000   +strand   -138 : -121   CCACGTCACCGATCCGCG
AC RSP00839   Mean Expected Number 0.003   -strand   -121 : -128   CGCGGATC
AC RSP00854   Mean Expected Number 0.002   +strand   -124 : -116   CGCGGCATC
AC RSP00874   Mean Expected Number 0.001   -strand    -28 :  -38   TCTTAAAGGGG
AC RSP00877   Mean Expected Number 0.009   +strand   -167 : -159   CCCGCCAAA
AC RSP01280   Mean Expected Number 0.008   -strand   -129 : -139   GGTGACGTGGC
AC RSP01316   Mean Expected Number 0.000   +strand   -138 : -121   CCACGTCAcCGATCCGCG
AC RSP01317   Mean Expected Number 0.000   +strand   -138 : -121   CCACGTCACCGATCCGCG
AC RSP01318   Mean Expected Number 0.000   +strand   -138 : -121   CCACGTCACCGATCCGCG
AC RSP01319   Mean Expected Number 0.000   +strand   -138 : -121   CCACGTCAcCGATCCGCG
AC RSP01511   Mean Expected Number 0.003   +strand   -123 : -116   GCGGCATC
AC RSP01729   Mean Expected Number 0.001   -strand   -129 : -140   GGTGACGTGGCC

  Totally      15 motifs of    15 different REs have been found


Description of REs found

   59. Group TF: ABF /AC: RSP00060//OS: Zea mays /GENE: rab28/RE: CE3 /TF: ABF
  111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown
  255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC:  RSP01563
  269. Group RE: type I element /AC: RSP00278//OS: Triticum aestivum /GENE: H3/RE: type I element /TF: unknown ||Identical REs AC:  RSP01315
  784. Group RE: OCT /AC: RSP00839//OS: Arabidopsis thaliana /GENE: H4A748/RE: OCT /TF: unknown ||Identical REs AC:  RSP00845
  791. Group RE: OCT /AC: RSP00854//OS: Zea mays /GENE: H4C7/RE: OCT /TF: unknown
  810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3
  813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F
 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5
 1208. Group RE: Type I element /Group TF: HBP-1a/HBP-1b family /AC: RSP01316//OS: Medicago sativa /GENE: H3 (ALH3-1.1)/RE: Type I element /TF: HBP-1a/HBP-1b family
 1209. Group RE: Type I element /Group TF: HBP-1a/HBP-1b family /AC: RSP01317//OS: Petroselinum crispum /GENE: H3 (PcH3-7/PcH3-16/PcH3-20)/RE: Type I element /TF: HBP-1a/HBP-1b family
 1210. Group RE: Type I element /Group TF: HBP-1a/HBP-1b family /AC: RSP01318//OS: Triticum aestivum /GENE: H4 (TH011/TH041)/RE: Type I element /TF: HBP-1a/HBP-1b family
 1211. Group RE: Type I element /Group TF: HBP-1a/HBP-1b family /AC: RSP01319//OS: Zea mays /GENE: H4 (C7/C13)/RE: Type I element /TF: HBP-1a/HBP-1b family
 1365. Group RE: OLS /AC: RSP01511//OS: Triticum aestivum /GENE: H1 (TH315)/RE: OLS /TF: unknown ||Identical REs AC:  RSP01512
 1537. Group TF: STF1/HY5 /AC: RSP01729//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex /TF: STF1/HY5