> PLPR0305 ..AC:J05486 ..OS:Avena sativa ..GENE: avenin ..PROD:seed storage protein ..[ -200: +51] ..CDS: +74 |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.21 C - 0.22
1 cgaaaggtga tacatgtaat ggcaaagcaa cttttatgat cgatccaaaa
51 ataacatttg taggtagtgc caccaaacac aacataccaa ataatcagtt
101 cgagaagcat acaagcattt tttaaggaaa agcaaatgca aagatgaaaa
151 gaaactatgc catggcagaT ATAAATAgac ctgcaccatg gagatcctcc
201 TCCATCATTC ATCCTTCACA CACCGAGAGC ACAAACATTA AAACCTAGCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00489 Mean Expected Number 0.002 -strand -135 : -144 TACCTACaAA
AC RSP01012 Mean Expected Number 0.004 -strand -136 : -142 ACCTACA
Totally 2 motifs of 2 different REs have been found
Description of REs found
465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown
930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4
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