> PLPR0306 ..AC:U92460.1 ..OS:Arabidopsis thaliana ..GENE:OPR1 ..PROD:12-oxophytodienoate reductase ..[ -200: +51] ..CDS: +71 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.28 C - 0.21
1 agtggttaag ctctctaatg tcgtcaatga atacgtcatc atgaagaaat
51 aaataatttc caagtggatg gacttgggga ggtccacaca tacgtcgtca
101 atgacgacca cgtcccttaa ggcgaaataa acacttgcct tcctaaattc
151 tctgatcaat caatgtgTAT AAATAtgcgc agatatatcc attatcctcc
201 ACAATTCAGG GAAAATCTTC AAAGTGTTTG CAGAGAAATC TAAATTCATC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00103 Mean Expected Number 0.007 +strand -115 : -106 aCACATACGT
AC RSP00522 Mean Expected Number 0.009 -strand -134 : -140 CCACTTG
AC RSP00683 Mean Expected Number 0.004 +strand -142 : -133 tCCAAGTGGA
AC RSP00997 Mean Expected Number 0.004 -strand -161 : -170 GATGACGTAT
Totally 4 motifs of 4 different REs have been found
Description of REs found
101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown
498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3
918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2)
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